Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0802KEGG: cth:Cthe_1773 peptidase S16, lon-like protein. (801 aa)    
Predicted Functional Partners:
Ccel_0801
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
       0.655
Ccel_0800
PFAM: peptidase M22 glycoprotease; KEGG: cth:Cthe_1775 peptidase M22, glycoprotease.
       0.654
Ccel_0799
PFAM: protein of unknown function UPF0079; KEGG: cth:Cthe_1776 hypothetical protein.
       0.635
Ccel_0798
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cth:Cthe_1777 amidohydrolase.
       0.624
Ccel_0803
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_2731 ECF subfamily RNA polymerase sigma-24 factor.
       0.518
Ccel_0804
KEGG: cth:Cthe_2732 hypothetical protein.
       0.518
Ccel_0805
KEGG: nth:Nther_2043 hypothetical protein.
       0.518
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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