Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0804KEGG: cth:Cthe_2732 hypothetical protein. (188 aa)    
Predicted Functional Partners:
Ccel_0803
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_2731 ECF subfamily RNA polymerase sigma-24 factor.
  
 
 0.803
Ccel_0805
KEGG: nth:Nther_2043 hypothetical protein.
       0.787
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.748
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
     0.742
Ccel_1519
KEGG: predicted protein.
  
     0.742
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
  
 
   0.741
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.741
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.740
Ccel_0254
KEGG: cth:Cthe_2130 hypothetical protein.
  
     0.731
Ccel_0736
PFAM: cellulosome protein dockerin type I; KEGG: cac:CAC0918 non-processive endoglucanase.
  
     0.712
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.