STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0822KEGG: cpy:Cphy_2996 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Ccel_2067
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
   
 
 0.646
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.577
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
  
 0.495
Ccel_0823
PFAM: Integrase catalytic region; KEGG: lpf:lpl2033 hypothetical protein.
       0.476
Ccel_1955
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: cth:Cthe_0606 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.459
Ccel_0275
PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
    
 
 0.448
Ccel_0648
PFAM: Fibronectin type III domain protein; KEGG: swd:Swoo_0198 YD repeat-containing protein.
    
 
 0.448
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
    
 
 0.448
Ccel_0901
PFAM: copper amine oxidase domain protein; KEGG: aoe:Clos_2285 copper amine oxidase domain-containing protein.
    
 
 0.448
Ccel_1020
KEGG: cpy:Cphy_0874 hypothetical protein.
    
 
 0.448
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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