Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0827KEGG: cbb:CLD_2071 hypothetical protein. (586 aa)    
Predicted Functional Partners:
Ccel_0826
KEGG: cbb:CLD_2462 hypothetical protein.
 
  
 0.991
Ccel_1501
PFAM: tail sheath protein; KEGG: sgr:SGR_2066 putative phage tail sheath protein.
  
  
 0.870
Ccel_1514
TIGRFAM: phage tail protein; KEGG: npu:Npun_F1414 phage tail protein.
  
  
 0.862
Ccel_1508
Phage protein D; KEGG: mag:amb1891 phage protein D.
  
  
 0.856
Ccel_1511
PFAM: GPW/gp25 family protein; KEGG: gsu:GSU0986 tail lysozyme, putative.
  
  
 0.838
Ccel_0828
Hypothetical protein.
       0.752
Ccel_0829
Hypothetical protein.
       0.752
Ccel_2833
KEGG: bca:BCE_0401 hypothetical protein.
 
     0.557
Ccel_1181
Hypothetical protein; KEGG: cbl:CLK_2533 ABC transporter, permease protein.
  
     0.555
Ccel_2825
KEGG: bca:BCE_0409 hypothetical protein.
 
     0.490
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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