Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0831Hypothetical protein. (83 aa)    
Predicted Functional Partners:
Ccel_0832
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bha:BH3665 N-acetylmuramoyl-L-alanine amidase (major autolysin).
       0.768
Ccel_0833
Hypothetical protein.
       0.768
Ccel_0830
PFAM: SH3 type 3 domain protein; KEGG: NLP/P60 family protein, putative.
       0.526
Ccel_0834
TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: ckl:CKL_4048 DNA methylase.
       0.481
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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