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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0834TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: ckl:CKL_4048 DNA methylase. (251 aa)    
Predicted Functional Partners:
Ccel_2787
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: hmo:HM1_0574 d12 class n6 adenine-specific DNA methyltransferase superfamily protein.
  
  
 
0.907
Ccel_2753
KEGG: hmo:HM1_0605 hypothetical protein.
 
     0.691
Ccel_2755
KEGG: hmo:HM1_0601 hypothetical protein.
  
     0.662
Ccel_2747
KEGG: hmo:HM1_0617 hypothetical protein.
  
     0.653
Ccel_2738
PFAM: TRAG family protein; KEGG: hmo:HM1_0622 TraG/TraD family protein, putative.
 
     0.652
Ccel_2764
KEGG: hmo:HM1_0599 hypothetical protein.
  
     0.648
Ccel_2768
KEGG: ckl:CKL_3882 hypothetical protein.
 
     0.647
Ccel_2782
KEGG: hmo:HM1_0579 hypothetical protein.
 
     0.635
Ccel_2740
KEGG: ckl:CKL_3863 hypothetical protein.
 
     0.633
Ccel_2746
KEGG: ckl:CKL_3870 hypothetical protein.
  
     0.618
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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