Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0857PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_3937 hypothetical protein. (459 aa)    
Predicted Functional Partners:
Ccel_0855
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_2430 ABC transporter, ATP-binding protein.
 
 
 0.919
Ccel_0856
PFAM: protein of unknown function DUF214; KEGG: afw:Anae109_0497 hypothetical protein.
 
    
0.728
Ccel_0466
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1763 ABC transporter related protein.
  
 
 0.698
Ccel_0557
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_3392 hypothetical protein.
 
 
 0.641
Ccel_1151
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbl:CLK_0187 ABC transporter, ATP-binding protein.
 
 
 0.638
Ccel_2703
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS3158 ABC transporter, ATP-binding protein.
  
 
 0.580
Ccel_2356
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_2590 ABC transporter related.
  
 
 0.561
Ccel_0854
PfaD family protein; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PfaD family protein; PFAM: 2-nitropropane dioxygenase NPD; Acyl transferase; KEGG: gur:Gura_3105 malonyl CoA-acyl carrier protein transacylase.
 
     0.517
Ccel_0859
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bay:RBAM_014350 MlnC.
     
 0.503
Ccel_0860
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bay:RBAM_014390 MlnG.
     
 0.503
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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