Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0873PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sez:Sez_1209 oxygen-independent coproporphyrinogen III oxidase 1. (443 aa)    
Predicted Functional Partners:
Ccel_0876
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rfr:Rfer_3218 UBA/ThiF-type NAD/FAD binding protein.
  
    0.762
Ccel_0874
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: wpi:WP1025 3-oxoacyl-(acyl-carrier-protein) synthase III.
       0.752
Ccel_0875
KEGG: rxy:Rxyl_2997 coenzyme F390 synthetase-like protein.
       0.751
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
   
 0.636
Ccel_0872
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tpd:Teth39_1287 3-oxoacyl-(acyl-carrier-protein) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.628
Ccel_0871
Hypothetical protein.
       0.600
Ccel_1278
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase.
  
  
 0.590
Ccel_0869
Hypothetical protein.
       0.553
Ccel_0870
PFAM: alpha/beta hydrolase fold; KEGG: amt:Amet_0320 alpha/beta hydrolase fold.
       0.553
Ccel_0867
PFAM: Beta-ketoacyl synthase; KEGG: tye:THEYE_A0103 beta-ketoacyl-acyl carrier protein synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.493
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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