STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0877PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_1170 major facilitator transporter. (436 aa)    
Predicted Functional Partners:
Ccel_2443
PFAM: major facilitator superfamily MFS_1; KEGG: mem:Memar_2034 major facilitator transporter.
  
     0.605
Ccel_1974
KEGG: csc:Csac_1811 hypothetical protein.
  
     0.580
Ccel_2087
PFAM: major facilitator superfamily MFS_1; KEGG: cpy:Cphy_1907 major facilitator transporter.
  
     0.574
Ccel_0948
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_3240 extracellular solute-binding protein.
  
     0.555
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
     0.545
Ccel_1519
KEGG: predicted protein.
  
     0.491
Ccel_1138
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4676 response regulator receiver protein.
  
     0.472
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.465
Ccel_1720
KEGG: mgi:Mflv_2011 hypothetical protein.
  
     0.463
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.462
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.