Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0880PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_2573 ABC transporter related protein. (256 aa)    
Predicted Functional Partners:
Ccel_0879
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY3394 hypothetical protein.
 
 
 0.988
Ccel_0878
KEGG: cth:Cthe_2575 hypothetical protein.
 
 
 0.979
Ccel_0436
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2803 binding-protein-dependent transport systems inner membrane component.
 
 
 0.922
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
  
 
0.919
Ccel_0891
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aoe:Clos_2538 ornithine carbamoyltransferase.
    
  0.913
Ccel_0892
PFAM: extracellular solute-binding protein family 1; KEGG: cno:NT01CX_1229 extracellular solute-binding protein, putative.
    
 0.913
Ccel_0437
SMART: extracellular solute-binding protein family 3; KEGG: cth:Cthe_2802 NlpA lipoprotein.
 
 
 0.884
Ccel_0881
KEGG: cth:Cthe_2805 carbohydrate-binding, CenC-like protein.
  
    0.454
Ccel_0469
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein.
 
     0.446
Ccel_3083
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein.
  
     0.422
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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