Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0885PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: swo:Swol_0316 extracellular solute-binding protein, family 3. (284 aa)    
Predicted Functional Partners:
Ccel_0886
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mst:Msp_0959 polar amino acid ABC transporter permease.
 
 0.996
Ccel_1631
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1431 amino acid ABC transporter permease.
 
 0.988
Ccel_2588
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbb:CLD_2608 His/Glu/Gln/Arg/opine ABC transporter permease.
 
 0.986
Ccel_1632
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1430 amino acid ABC transporter permease.
 
 0.905
Ccel_0887
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3385 hypothetical protein.
 
 
 0.901
Ccel_2587
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0934 ABC transporter.
 
 
 0.842
Ccel_0882
KEGG: dsy:DSY3041 hypothetical protein.
     
 0.576
Ccel_1633
ABC transporter related; PFAM: extracellular solute-binding protein family 3; ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0795 amino acid ABC transporter, ATP-binding protein.
 
 
0.523
Ccel_1768
PFAM: extracellular solute-binding protein family 5; KEGG: tpd:Teth39_0202 extracellular solute-binding protein.
   
  
 0.479
Ccel_0884
PFAM: Peptidase M23; KEGG: cpy:Cphy_2289 peptidase M23B.
       0.473
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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