Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0886TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mst:Msp_0959 polar amino acid ABC transporter permease. (210 aa)    
Predicted Functional Partners:
Ccel_0885
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: swo:Swol_0316 extracellular solute-binding protein, family 3.
 
 0.996
Ccel_2589
PFAM: extracellular solute-binding protein family 3; KEGG: aoe:Clos_0183 extracellular solute-binding protein.
 
 0.984
Ccel_0887
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3385 hypothetical protein.
 
 0.977
Ccel_1633
ABC transporter related; PFAM: extracellular solute-binding protein family 3; ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0795 amino acid ABC transporter, ATP-binding protein.
 
 0.966
Ccel_2587
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0934 ABC transporter.
 
 0.930
Ccel_1635
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein.
 
 
 0.873
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.582
Ccel_3413
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: cpy:Cphy_3489 ABC-3 protein.
   
 
 0.542
Ccel_0890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aoe:Clos_2539 binding-protein-dependent transport systems inner membrane component.
  
  
 0.526
Ccel_1631
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1431 amino acid ABC transporter permease.
  
  
 
0.510
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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