Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_0887PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3385 hypothetical protein. (253 aa)    
Predicted Functional Partners:
Ccel_0886
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mst:Msp_0959 polar amino acid ABC transporter permease.
 
 0.977
Ccel_2588
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbb:CLD_2608 His/Glu/Gln/Arg/opine ABC transporter permease.
 
 0.965
Ccel_1631
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1431 amino acid ABC transporter permease.
 
 
 0.950
Ccel_1632
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1430 amino acid ABC transporter permease.
 
 
 0.915
Ccel_0885
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: swo:Swol_0316 extracellular solute-binding protein, family 3.
 
 
 0.901
Ccel_2589
PFAM: extracellular solute-binding protein family 3; KEGG: aoe:Clos_0183 extracellular solute-binding protein.
 
 
 0.885
Ccel_0469
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein.
 
      0.854
Ccel_1635
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein.
 
 
 0.842
Ccel_0888
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: cno:NT01CX_1225 DNA-binding protein, putative.
     
 0.460
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
    
0.413
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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