Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_0892PFAM: extracellular solute-binding protein family 1; KEGG: cno:NT01CX_1229 extracellular solute-binding protein, putative. (350 aa)    
Predicted Functional Partners:
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.999
Ccel_0891
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aoe:Clos_2538 ornithine carbamoyltransferase.
 0.999
Ccel_0890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aoe:Clos_2539 binding-protein-dependent transport systems inner membrane component.
 
 
 0.998
Ccel_0880
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_2573 ABC transporter related protein.
    
 0.913
Ccel_0888
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: cno:NT01CX_1225 DNA-binding protein, putative.
 
   
 0.796
Ccel_3198
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: cdf:CD2966 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.566
Ccel_2448
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: nth:Nther_0727 FAD dependent oxidoreductase.
     
 0.463
Ccel_0893
PFAM: Rubrerythrin; KEGG: ckl:CKL_2032 Rbr1.
       0.433
Ccel_0887
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3385 hypothetical protein.
     
 0.402
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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