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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0893PFAM: Rubrerythrin; KEGG: ckl:CKL_2032 Rbr1. (194 aa)    
Predicted Functional Partners:
Ccel_0321
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: drm:Dred_2942 hypothetical protein.
 
  
 0.536
Ccel_3474
TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dps:DP1668 desulfoferrodoxin.
 
  
 0.524
Ccel_0894
PFAM: iron-containing alcohol dehydrogenase; KEGG: mta:Moth_1911 iron-containing alcohol dehydrogenase.
 
    0.520
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
   
 
 0.475
Ccel_3357
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_2164 rubredoxin-type Fe(Cys)4 protein.
  
  
 0.475
Ccel_0890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aoe:Clos_2539 binding-protein-dependent transport systems inner membrane component.
       0.433
Ccel_0891
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aoe:Clos_2538 ornithine carbamoyltransferase.
       0.433
Ccel_0892
PFAM: extracellular solute-binding protein family 1; KEGG: cno:NT01CX_1229 extracellular solute-binding protein, putative.
       0.433
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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