Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0901PFAM: copper amine oxidase domain protein; KEGG: aoe:Clos_2285 copper amine oxidase domain-containing protein. (338 aa)    
Predicted Functional Partners:
Ccel_1126
PFAM: copper amine oxidase domain protein; KEGG: nmr:Nmar_0998 hypothetical protein.
 
   
 0.755
Ccel_0289
PFAM: S-layer domain protein; KEGG: cth:Cthe_1931 S-layer-like domain-containing protein.
  
   
 0.649
Ccel_1146
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0744 copper amine oxidase-like protein.
  
   0.636
Ccel_2633
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.612
Ccel_3132
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.607
Ccel_2393
PFAM: S-layer domain protein; KEGG: btk:BT9727_0789 S-layer protein.
  
   
 0.601
Ccel_2923
KEGG: aoe:Clos_2272 hypothetical protein.
  
     0.596
Ccel_2334
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_1909 copper amine oxidase-like protein.
 
  
 0.591
Ccel_3019
PFAM: S-layer domain protein; KEGG: swo:Swol_0298 hypothetical protein.
  
  
 0.514
Ccel_2364
PFAM: S-layer domain protein; Ig domain protein group 2 domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
  
     0.505
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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