STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0904PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative. (192 aa)    
Predicted Functional Partners:
Ccel_0905
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.898
Ccel_0208
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.732
Ccel_1163
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.732
Ccel_1209
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.732
Ccel_1378
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.732
Ccel_1573
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.732
Ccel_1584
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.732
Ccel_1595
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.732
Ccel_2154
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
 
    0.732
Ccel_2371
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
  
    0.731
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.