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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0941Xylose isomerase domain protein TIM barrel; Involved in the biosynthesis of D-psicose. Catalyzes the reversible epimerization of D-fructose at the C3 position to yield D- psicose. The enzyme is highly specific for D-psicose and shows very low activity with D-tagatose. (293 aa)    
Predicted Functional Partners:
Ccel_1125
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: cac:CAC1480 dehydrogenase.
  
  
 0.800
Ccel_1033
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
   
 0.694
tpiA
Phosphoglycerate kinase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.677
Ccel_0942
KEGG: cpy:Cphy_3243 hypothetical protein.
       0.671
Ccel_0500
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cth:Cthe_0234 AMP-dependent synthetase and ligase.
  
   
 0.600
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cdf:CD3065 xylulose kinase.
 
  
 0.529
Ccel_0943
PFAM: FAD dependent oxidoreductase; KEGG: rle:RL3853 putative protein involved in invasion.
       0.526
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily.
 
  
 0.517
Ccel_1925
PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; KEGG: tpd:Teth39_1081 xylose isomerase domain-containing protein.
      
 0.494
Ccel_1080
PFAM: PfkB domain protein; KEGG: cbt:CLH_3246 kinase, PfkB family.
 
  
 0.489
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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