Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0955PFAM: Accessory gene regulator B; KEGG: cth:Cthe_2358 accessory gene regulator B. (211 aa)    
Predicted Functional Partners:
Ccel_2127
PFAM: Accessory gene regulator B; KEGG: cth:Cthe_1310 accessory gene regulator B.
  
  
  0.947
Ccel_2798
PFAM: Accessory gene regulator B; KEGG: cth:Cthe_2358 accessory gene regulator B.
  
  
 
0.900
Ccel_3455
PFAM: Accessory gene regulator B; KEGG: ckl:CKL_3367 AgrB-like protein.
     
  0.900
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
  
     0.670
Ccel_2928
KEGG: cth:Cthe_2695 hypothetical protein.
  
     0.650
Ccel_0592
PFAM: regulatory protein MerR; KEGG: cth:Cthe_0804 MerR family transcriptional regulator.
  
     0.645
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
  
     0.635
Ccel_0254
KEGG: cth:Cthe_2130 hypothetical protein.
  
     0.634
Ccel_2169
KEGG: cth:Cthe_3163 carbohydrate-binding family 25 protein.
  
     0.616
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.590
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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