Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0966PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfu:PF1011 daunorubicin resistance ATP-binding protein DrrA. (310 aa)    
Predicted Functional Partners:
Ccel_0967
PFAM: ABC-2 type transporter; KEGG: swd:Swoo_2004 ABC-2 type transporter.
 
  
 0.854
Ccel_0343
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC1558 ABC-type transport system,membrane ATPase component.
  
  0.567
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
 
  
 0.540
cysS
TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: dth:DICTH_1585 cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.531
Ccel_1919
PFAM: regulatory protein GntR HTH; KEGG: cbt:CLH_0644 transcriptional regulator, GntR family.
  
    0.519
Ccel_2158
KEGG: tle:Tlet_1861 putative ABC-2 type transport system permease protein.
  
 
 0.495
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.492
Ccel_1816
PFAM: glycosyl transferase family 2; KEGG: sgr:SGR_2292 putative sugar transferase.
  
 
 
 0.479
Ccel_0024
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_2407 AAA ATPase, central region.
  
 
 0.471
Ccel_1214
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swd:Swoo_1668 short-chain dehydrogenase/reductase SDR.
  
 
   0.457
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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