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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0973PFAM: beta-lactamase; KEGG: bwe:BcerKBAB4_1783 cyclic peptide transporter. (514 aa)    
Predicted Functional Partners:
Ccel_0972
TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28 domain; KEGG: cbe:Cbei_1729 glycosyltransferase, MGT family.
 
     0.805
Ccel_0974
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; cobalamin B12-binding domain protein; phosphopantetheine-binding; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bwe:BcerKBAB4_1784 amino acid adenylation domain-containing protein.
 
    0.795
Ccel_0977
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Non-ribosomal peptide synthetase; Beta-ketoacyl synthase; KEGG: cyt:cce_3073 peptide synthetase.
 
  
 0.721
Ccel_0980
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: npu:Npun_CR072 amino acid adenylation domain-containing protein.
 
  
 0.707
Ccel_0976
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: ckl:CKL_2355 hybrid nonribosomal peptide synthetase/polyketide synthase.
 
     0.677
Ccel_0979
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase; KEGG: pfo:Pfl01_2265 amino acid adenylation.
  
  
 0.661
Ccel_0975
PFAM: Acyl transferase; KEGG: ckl:CKL_1732 PKS acyltransferase domain-containing protein.
       0.613
Ccel_0978
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: amr:AM1_A0228 beta-ketoacyl synthase, putative.
       0.613
Ccel_0982
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: ava:Ava_4099 non-ribosomal peptide synthase.
 
    0.588
Ccel_0981
PFAM: Pyridoxal-dependent decarboxylase; KEGG: spc:Sputcn32_1469 pyridoxal-dependent decarboxylase.
 
     0.580
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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