Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0993Carbohydrate-binding family 9; PFAM: S-layer domain protein; Fibronectin type III domain protein; Carbohydrate-binding family 9; KEGG: cth:Cthe_2195 carbohydrate-binding family 6 protein. (2286 aa)    
Predicted Functional Partners:
Ccel_1550
PFAM: glycoside hydrolase family 18; cellulosome protein dockerin type I; SMART: chitinase II; KEGG: bcl:ABC0646 chitinase; Belongs to the glycosyl hydrolase 18 family.
 
 
 
 0.666
Ccel_2633
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.571
Ccel_3132
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.557
Ccel_1126
PFAM: copper amine oxidase domain protein; KEGG: nmr:Nmar_0998 hypothetical protein.
  
   
 0.556
Ccel_1231
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_2196 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.528
Ccel_0278
PFAM: S-layer domain protein; KEGG: cth:Cthe_2613 S-layer-like domain-containing protein.
  
     0.516
Ccel_1235
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_2196 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.509
Ccel_1242
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cth:Cthe_3012 carbohydrate-binding family 6 protein.
  
   
 0.501
Ccel_1234
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 62; SMART: cellulose binding type IV; KEGG: cth:Cthe_2194 carbohydrate-binding family 6 protein.
  
    0.489
Ccel_1229
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_1271 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.486
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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