Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1002PFAM: glycoside hydrolase family 4; KEGG: bcl:ABC0412 alpha-galactosidase. (489 aa)    
Predicted Functional Partners:
Ccel_1001
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: bcl:ABC0403 AraC/XylS family transcriptional regulator.
 
     0.653
Ccel_1252
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_1773 peripheral protein.
  
     0.591
Ccel_2451
PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: pmo:Pmob_0829 beta-galactosidase.
 
   
 0.488
Ccel_2112
PFAM: extracellular solute-binding protein family 1; KEGG: ace:Acel_0130 extracellular solute-binding protein, family 1.
  
     0.476
Ccel_0998
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_3409 extracellular solute-binding protein.
  
     0.435
Ccel_1221
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
  
     0.417
Ccel_1133
PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4680 extracellular solute-binding protein, family 1.
  
     0.406
Ccel_1136
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0692 extracellular solute-binding protein.
  
     0.403
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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