Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Ccel_1011PFAM: glycoside hydrolase family 43; KEGG: cpy:Cphy_0531 alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (471 aa)    
Predicted Functional Partners:
Ccel_3463
Carbohydrate-binding family 9; PFAM: Ig domain protein group 2 domain protein; Carbohydrate-binding family 9; KEGG: cth:Cthe_0912 glycoside hydrolase family protein.
  
     0.738
Ccel_2669
PFAM: Carbohydrate-binding family 9; KEGG: cth:Cthe_0912 glycoside hydrolase family protein.
  
     0.734
Ccel_0920
PFAM: cellulosome protein dockerin type I; KEGG: cth:Cthe_0912 glycoside hydrolase family protein.
  
     0.678
Ccel_0150
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
  
     0.664
Ccel_1258
PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y.
 
   
 0.660
Ccel_0145
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_1918 extracellular solute-binding protein.
  
     0.638
Ccel_1257
PFAM: glycoside hydrolase family 43; KEGG: fjo:Fjoh_3875 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.626
Ccel_2458
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_1549 hypothetical protein.
  
     0.592
Ccel_2320
PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: ote:Oter_1101 endo-1,4-beta-xylanase.
 
   
 0.565
Ccel_1298
PFAM: glycoside hydrolase family 8; cellulosome protein dockerin type I; KEGG: chu:CHU_1240 bifunctional xylanase/esterase; CBM9 module, glycoside hydrolase family 8 protein and carbohydrate esterase family 4 protein.
 
   
 0.545
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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