STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1015PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3208 hypothetical protein. (296 aa)    
Predicted Functional Partners:
Ccel_1014
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0393 binding-protein-dependent transport systems inner membrane component.
 
  0.993
Ccel_0143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1916 binding-protein-dependent transport systems inner membrane component.
 
  0.967
Ccel_0151
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3209 binding-protein-dependent transport systems inner membrane component.
 
  0.967
Ccel_0946
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3242 binding-protein-dependent transport systems inner membrane component.
 
  0.967
Ccel_1253
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0727 polysaccharide ABC transporter permease.
 
  0.967
Ccel_2456
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1547 binding-protein-dependent transport systems inner membrane component.
 
  0.967
Ccel_1016
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_2193 extracellular solute-binding protein.
 
   0.933
Ccel_2909
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 
 
 0.886
Ccel_2111
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3214 sugar ABC transporter permease.
 
 0.884
Ccel_0999
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2515 binding-protein-dependent transport systems inner membrane component.
 
 0.880
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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