Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1016PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_2193 extracellular solute-binding protein. (585 aa)    
Predicted Functional Partners:
Ccel_1015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3208 hypothetical protein.
 
   0.928
Ccel_1014
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0393 binding-protein-dependent transport systems inner membrane component.
 
  
 0.874
Ccel_0152
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3208 binding-protein-dependent transport systems inner membrane component.
 
   0.839
Ccel_1254
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1066 hypothetical protein.
 
   0.834
Ccel_0144
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpu:BPUM_2666 ABC transporter ATP-binding protein.
 
   0.803
Ccel_2457
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1548 binding-protein-dependent transport systems inner membrane component.
 
   0.787
Ccel_1253
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0727 polysaccharide ABC transporter permease.
 
  
 0.778
Ccel_0946
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3242 binding-protein-dependent transport systems inner membrane component.
 
  
 0.775
Ccel_0143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1916 binding-protein-dependent transport systems inner membrane component.
 
  
 0.774
Ccel_0151
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3209 binding-protein-dependent transport systems inner membrane component.
 
  
 0.770
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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