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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1027PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4678 binding-protein-dependent transport systems inner membrane component. (279 aa)    
Predicted Functional Partners:
Ccel_1026
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4679 binding-protein-dependent transport systems inner membrane component.
 0.994
Ccel_2909
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 0.984
Ccel_0201
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease.
 0.977
Ccel_1134
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4679 binding-protein-dependent transport systems inner membrane component.
 0.977
Ccel_2996
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llc:LACR_1477 ABC-type sugar transport system, permease component.
 0.977
Ccel_3245
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1426 binding-protein-dependent transport systems inner membrane component.
 0.977
Ccel_2111
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3214 sugar ABC transporter permease.
 
 0.898
Ccel_0999
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2515 binding-protein-dependent transport systems inner membrane component.
 
 0.893
Ccel_1025
PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4680 extracellular solute-binding protein, family 1.
 
 
 0.882
Ccel_0200
PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4964 extracellular solute-binding protein, family 1.
 
 
 0.725
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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