STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1035PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stl:stu1532 glyoxalase I/lactoylglutathione lyase. (128 aa)    
Predicted Functional Partners:
Ccel_1949
PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_1342 beta-lactamase-like protein.
    
 0.908
Ccel_1084
TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; KEGG: cbt:CLH_3241 tryptophan synthase, alpha subunit.
  
  
  0.849
trpB-2
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.815
Ccel_1778
PFAM: amine oxidase; KEGG: cpy:Cphy_2915 amine oxidase.
   
 
 0.805
trpB
Pyridoxal-phosphate dependent TrpB-like enzyme; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
  0.800
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
  0.800
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.747
Ccel_1034
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: afl:Aflv_2782 transcriptional regulator of deoxyribonucleoside metabolism.
       0.746
Ccel_1519
KEGG: predicted protein.
  
     0.745
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.743
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.