Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1040Collagenase and related protease-like protein; KEGG: sso:SSO1759 protease, putative. (360 aa)    
Predicted Functional Partners:
Ccel_2304
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: aoe:Clos_0989 NADH dehydrogenase (quinone).
  
   0.784
Ccel_1041
Hypothetical protein; KEGG: mbn:Mboo_1451 GHMP kinase.
       0.697
Ccel_1042
PFAM: aminotransferase class I and II; KEGG: cdf:CD1549 putative histidinol-phosphate aminotransferase.
       0.697
Ccel_1043
PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: cth:Cthe_1482 Cof-like hydrolase.
 
     0.670
Ccel_1044
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ctc:CTC01641 putative transcriptional regulatory protein.
       0.623
Ccel_1473
PFAM: O-methyltransferase family 3; Methyltransferase type 11; KEGG: cth:Cthe_1009 O-methyltransferase family protein.
  
  
 0.621
Ccel_1045
PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; KEGG: fnu:FN0475 MiaB protein.
  
  
 0.615
Ccel_1039
PFAM: Pyridoxal-dependent decarboxylase; KEGG: mst:Msp_0329 MfnA.
       0.579
Ccel_3368
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: csc:Csac_1537 NADH dehydrogenase (ubiquinone), 30 kDa subunit.
   
   0.514
Ccel_1046
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_1705 cobalamin B12-binding/radical SAM family protein.
 
     0.495
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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