Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1044PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ctc:CTC01641 putative transcriptional regulatory protein. (228 aa)    
Predicted Functional Partners:
Ccel_1043
PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: cth:Cthe_1482 Cof-like hydrolase.
       0.773
Ccel_1045
PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; KEGG: fnu:FN0475 MiaB protein.
 
  
 0.743
Ccel_1042
PFAM: aminotransferase class I and II; KEGG: cdf:CD1549 putative histidinol-phosphate aminotransferase.
       0.696
Ccel_1041
Hypothetical protein; KEGG: mbn:Mboo_1451 GHMP kinase.
       0.689
Ccel_1040
Collagenase and related protease-like protein; KEGG: sso:SSO1759 protease, putative.
       0.623
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
   
 
 0.502
Ccel_1039
PFAM: Pyridoxal-dependent decarboxylase; KEGG: mst:Msp_0329 MfnA.
       0.472
Ccel_1046
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_1705 cobalamin B12-binding/radical SAM family protein.
  
    0.466
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
     
 0.466
Ccel_1526
PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0564 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.413
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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