Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Ccel_1068PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dsy:DSY4671 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Ccel_1065
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: dsy:DSY4600 hypothetical protein.
 
  
 0.946
Ccel_2741
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cbe:Cbei_2112 arsenical-resistance protein.
  
  
 0.914
Ccel_1067
TIGRFAM: redox-active disulfide protein 2; KEGG: dsy:DSY4674 hypothetical protein.
 
  
 0.862
Ccel_2211
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cth:Cthe_0360 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.812
Ccel_1066
PFAM: permease; KEGG: blj:BLD_1092 hypothetical permease.
 
   
 0.750
Ccel_1144
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afl:Aflv_0303 multidomain redox protein (NAD(FAD)-dependent oxidoreductase; rhodanese domain; SirA-like redox domain; peroxiredoxin domain); Belongs to the sulfur carrier protein TusA family.
  
 
 0.590
Ccel_1619
KEGG: chy:CHY_0557 hypothetical protein.
 
    0.547
Ccel_1069
PFAM: cytochrome b5; KEGG: cac:CA_P0144 steroid-binding protein.
       0.473
Ccel_1070
TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cbl:CLK_1224 [Ni/Fe] hydrogenase, small subunit.
       0.473
Ccel_1071
PFAM: nickel-dependent hydrogenase large subunit; KEGG: cbb:CLD_2800 [Ni/Fe] hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
       0.473
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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