Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1069PFAM: cytochrome b5; KEGG: cac:CA_P0144 steroid-binding protein. (149 aa)    
Predicted Functional Partners:
Ccel_1071
PFAM: nickel-dependent hydrogenase large subunit; KEGG: cbb:CLD_2800 [Ni/Fe] hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
     0.885
Ccel_1072
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: cac:CA_P0143 hydrogenase maturation protease delta subunit, HyaD-like.
 
   
 0.881
Ccel_1070
TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cbl:CLK_1224 [Ni/Fe] hydrogenase, small subunit.
 
     0.879
Ccel_1067
TIGRFAM: redox-active disulfide protein 2; KEGG: dsy:DSY4674 hypothetical protein.
       0.473
Ccel_1068
PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dsy:DSY4671 hypothetical protein.
       0.473
Ccel_1213
PFAM: condensation domain protein; Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
     0.426
Ccel_1066
PFAM: permease; KEGG: blj:BLD_1092 hypothetical permease.
       0.419
Ccel_2406
KEGG: cno:NT01CX_1598 hypothetical protein.
  
     0.413
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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