Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1095KEGG: bcs:BCAN_A0517 hypothetical protein. (341 aa)    
Predicted Functional Partners:
Ccel_1096
Hypothetical protein.
       0.741
Ccel_2341
KEGG: cbf:CLI_2416 hypothetical protein.
  
    0.655
Ccel_0847
KEGG: dsy:DSY0716 hypothetical protein.
  
     0.653
Ccel_2642
SMART: Ig domain protein group 2 domain protein; KEGG: dsy:DSY1958 hypothetical protein.
  
     0.623
Ccel_2340
KEGG: paa:Paes_2303 hypothetical protein.
 
   
 0.570
Ccel_1097
Kelch repeat-containing protein; PFAM: PKD domain containing protein; NHL repeat containing protein; Fibronectin type III domain protein; Kelch repeat-containing protein; Two component regulator propeller; Kelch repeat protein; KEGG: csc:Csac_0278 hypothetical protein.
       0.516
Ccel_2647
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: dsy:DSY1956 hypothetical protein.
  
     0.495
Ccel_2641
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: dsy:DSY1956 hypothetical protein.
  
     0.468
Ccel_1094
PFAM: methyladenine glycosylase; KEGG: lin:lin1680 hypothetical protein.
       0.434
Ccel_2917
KEGG: sth:STH1943 hypothetical protein.
 
 
   0.429
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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