STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1109PFAM: protein of unknown function DUF1646; KEGG: tte:TTE0261 hypothetical protein. (351 aa)    
Predicted Functional Partners:
Ccel_2212
KEGG: ckl:CKL_2814 hypothetical protein.
  
     0.598
Ccel_0393
KEGG: tte:TTE1989 hypothetical protein.
  
     0.570
Ccel_0428
PFAM: S-layer domain protein; glycoside hydrolase family 5; Carbohydrate binding family 17/28; KEGG: csc:Csac_0678 cellulase.
  
     0.540
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.