STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1111PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase. (426 aa)    
Predicted Functional Partners:
Ccel_1357
KEGG: cth:Cthe_2350 cell wall hydrolase, SleB.
  
   
 0.662
Ccel_3013
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: aoe:Clos_2719 spore germination B3 GerAC family protein.
  
     0.642
Ccel_3011
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: aoe:Clos_2720 spore germination protein.
  
     0.587
Ccel_0884
PFAM: Peptidase M23; KEGG: cpy:Cphy_2289 peptidase M23B.
  
     0.573
Ccel_3014
PFAM: GerA spore germination protein; KEGG: aoe:Clos_2718 GerA spore germination protein.
  
     0.568
Ccel_1356
KEGG: cth:Cthe_2351 hypothetical protein.
  
    0.546
Ccel_0036
TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2416 peptidase.
  
  
 0.545
tlp
TIGRFAM: small, acid-soluble spore protein tlp; KEGG: cbe:Cbei_4610 small acid-soluble spore protein Tlp; Belongs to the Tlp family.
  
     0.542
Ccel_0523
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cth:Cthe_0669 spore germination B3 GerAC like.
  
     0.506
Ccel_1113
PFAM: UbiA prenyltransferase; KEGG: lwe:lwe2585 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
     0.498
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.