Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1114PFAM: protein of unknown function DUF1312; KEGG: cdf:CD2482 putative lipoprotein. (130 aa)    
Predicted Functional Partners:
Ccel_1115
PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cno:NT01CX_0720 hypothetical protein.
 
    0.941
Ccel_1525
PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cth:Cthe_0563 heptaprenyl diphosphate synthase component I.
 
    0.843
Ccel_1113
PFAM: UbiA prenyltransferase; KEGG: lwe:lwe2585 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
     0.794
Ccel_1112
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2486 NADH dehydrogenase, FAD-containing subunit.
 
    0.665
Ccel_1117
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.597
Ccel_1116
KEGG: aoe:Clos_0885 hypothetical protein.
       0.566
Ccel_1523
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.563
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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