STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1115PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cno:NT01CX_0720 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Ccel_1114
PFAM: protein of unknown function DUF1312; KEGG: cdf:CD2482 putative lipoprotein.
 
    0.940
Ccel_1526
PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0564 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.927
Ccel_1902
PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0831 farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.918
Ccel_1525
PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cth:Cthe_0563 heptaprenyl diphosphate synthase component I.
  
  
 
0.913
Ccel_0447
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.900
Ccel_1524
PFAM: protein of unknown function DUF1312; KEGG: cth:Cthe_0562 hypothetical protein.
 
    0.855
Ccel_1117
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.825
Ccel_1113
PFAM: UbiA prenyltransferase; KEGG: lwe:lwe2585 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
   
 0.778
Ccel_1116
KEGG: aoe:Clos_0885 hypothetical protein.
 
     0.728
Ccel_1112
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2486 NADH dehydrogenase, FAD-containing subunit.
 
     0.713
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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