Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1121KEGG: cac:CAC1520 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Ccel_1122
PFAM: protein of unknown function DUF421; KEGG: cbe:Cbei_2942 protein of unknown function DUF421.
 
     0.915
Ccel_1123
KEGG: cdf:CD1788 hypothetical protein.
       0.529
Ccel_1124
PFAM: protein of unknown function DUF421; KEGG: bsu:BSU13060 hypothetical protein.
       0.485
Ccel_2641
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: dsy:DSY1956 hypothetical protein.
  
     0.437
Ccel_2872
KEGG: cno:NT01CX_1826 hypothetical protein.
  
     0.403
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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