Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_1122PFAM: protein of unknown function DUF421; KEGG: cbe:Cbei_2942 protein of unknown function DUF421. (242 aa)    
Predicted Functional Partners:
Ccel_1121
KEGG: cac:CAC1520 hypothetical protein.
 
     0.915
Ccel_2281
TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: cth:Cthe_0123 stage V sporulation protein AD.
 
  
 0.761
Ccel_0654
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
 
  
 0.700
Ccel_2280
TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: cth:Cthe_0124 SpoVA protein.
 
  
 0.681
Ccel_1971
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
 
  
 0.676
Ccel_2282
TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: cth:Cthe_0122 SpoVA protein.
 
  
 0.670
Ccel_3014
PFAM: GerA spore germination protein; KEGG: aoe:Clos_2718 GerA spore germination protein.
 
  
 0.662
Ccel_0521
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
 
  
 0.637
Ccel_1124
PFAM: protein of unknown function DUF421; KEGG: bsu:BSU13060 hypothetical protein.
 
    
0.587
Ccel_1744
TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ; KEGG: cth:Cthe_0691 hypothetical protein.
  
     0.585
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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