STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1150Plasmid maintenance system antidote protein, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cth:Cthe_0049 XRE family transcriptional regulator. (230 aa)    
Predicted Functional Partners:
Ccel_2248
KEGG: ctc:CTC01950 hypothetical protein.
  
     0.723
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
 
   
 0.704
Ccel_1149
PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: cth:Cthe_1959 methyltransferase type 11.
 
     0.689
Ccel_0017
TIGRFAM: spore coat protein, CotS family; KEGG: cth:Cthe_2398 putative spore coat protein.
  
     0.654
Ccel_0371
PFAM: sulfatase; KEGG: cac:CAC2802 phosphoglycerol transferase.
  
     0.608
Ccel_0562
PFAM: transglutaminase domain protein; KEGG: cno:NT01CX_1704 transglutaminase-like enzyme, putative cysteine protease.
  
     0.588
Ccel_1152
PFAM: protein of unknown function DUF214; KEGG: cbh:CLC_0840 putative ABC transporter, permease protein.
 
     0.569
Ccel_0005
KEGG: cth:Cthe_2375 hypothetical protein.
  
     0.558
Ccel_0019
Hypothetical protein; KEGG: cbt:CLH_0458 sporulation peptidase YabG.
  
     0.520
Ccel_2872
KEGG: cno:NT01CX_1826 hypothetical protein.
  
     0.520
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.