Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1173PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tpd:Teth39_2175 3-ketoacyl-(acyl-carrier-protein) reductase. (256 aa)    
Predicted Functional Partners:
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
  
 
 0.698
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
 
 0.578
Ccel_1174
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: pmy:Pmen_1038 metallophosphoesterase; Belongs to the 5'-nucleotidase family.
   
   0.549
Ccel_0854
PfaD family protein; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PfaD family protein; PFAM: 2-nitropropane dioxygenase NPD; Acyl transferase; KEGG: gur:Gura_3105 malonyl CoA-acyl carrier protein transacylase.
 
 
 0.516
Ccel_2328
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ckl:CKL_1732 PKS acyltransferase domain-containing protein.
 
 
 0.441
Ccel_1032
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dth:DICTH_1536 oxidoreductase, short chain dehydrogenase/reductase family.
  
     0.439
Ccel_0975
PFAM: Acyl transferase; KEGG: ckl:CKL_1732 PKS acyltransferase domain-containing protein.
 
 
 0.437
Ccel_0683
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cth:Cthe_0935 [acyl-carrier-protein] S-malonyltransferase.
 
 
 0.425
Ccel_2380
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ckl:CKL_1732 PKS acyltransferase domain-containing protein.
 
 
 0.424
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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