Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1176KEGG: cdf:CD1088 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Ccel_1175
PFAM: transcriptional regulator PadR family protein; KEGG: lmo:lmo1213 hypothetical protein.
 
     0.930
Ccel_1178
ABC-type Na+ efflux pump permease component-like protein; KEGG: bcy:Bcer98_3209 sodium export permease protein.
 
     0.763
Ccel_1177
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_1057 ABC transporter related.
 
     0.735
Ccel_1519
KEGG: predicted protein.
  
     0.705
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.700
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.698
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
     0.675
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.667
Ccel_2194
PFAM: transcriptional regulator PadR family protein; KEGG: cth:Cthe_1491 PadR family transcriptional regulator.
 
     0.655
Ccel_2502
KEGG: cbe:Cbei_0745 hypothetical protein.
  
     0.618
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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