STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1180PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1191 ABC transporter, ATP-binding protein. (236 aa)    
Predicted Functional Partners:
Ccel_1181
Hypothetical protein; KEGG: cbl:CLK_2533 ABC transporter, permease protein.
 
     0.928
Ccel_1179
TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: cno:NT01CX_1588 mannose-6-phosphate isomerase, class I.
       0.678
Ccel_0296
PFAM: ABC-2 type transporter; KEGG: cth:Cthe_2707 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
 0.609
Ccel_1160
KEGG: hmo:HM1_1647 hypothetical protein.
  
 
 0.525
Ccel_2157
Hypothetical protein; KEGG: afl:Aflv_1572 ABC-type multidrug transport system, permease component.
  
 
 0.525
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
 
  
 0.487
Ccel_1177
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_1057 ABC transporter related.
 
    
0.476
Ccel_0196
KEGG: cdf:CD2104 putative ABC transporter, permease protein.
 
    0.474
Ccel_1182
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cth:Cthe_1803 cobalamin (vitamin B12) biosynthesis CbiM protein.
     
 0.454
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.449
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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