Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1202PFAM: YbbR family protein; KEGG: cth:Cthe_1165 YbbR-like protein. (414 aa)    
Predicted Functional Partners:
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.937
Ccel_1448
KEGG: cth:Cthe_1383 tetratricopeptide TPR_2.
  
     0.706
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.705
Ccel_1203
PFAM: FAD dependent oxidoreductase; KEGG: cth:Cthe_1164 FAD dependent oxidoreductase.
       0.665
Ccel_0508
Hypothetical protein; KEGG: cth:Cthe_1835 viral A-type inclusion repeat-containing protein.
  
     0.629
Ccel_0518
PFAM: 3D domain protein; KEGG: cth:Cthe_0664 hypothetical protein.
  
     0.625
Ccel_0288
Hypothetical protein; KEGG: cth:Cthe_1932 S-layer-like domain-containing protein.
  
     0.592
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
     0.591
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
 
     0.583
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
     0.582
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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