STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1207PFAM: cellulosome protein dockerin type I; Kelch repeat-containing protein; KEGG: cth:Cthe_1398 cellulosome enzyme, dockerin type I. (873 aa)    
Predicted Functional Partners:
Ccel_1866
PFAM: glycoside hydrolase family 11; KEGG: cpy:Cphy_2105 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.745
Ccel_0153
PFAM: glycoside hydrolase family 10; KEGG: csc:Csac_0204 glycoside hydrolase family protein.
  
     0.667
Ccel_1972
PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_0661 ricin B lectin; Belongs to the glycosyl hydrolase 43 family.
  
     0.595
Ccel_2226
PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: sus:Acid_2606 cellulase.
  
     0.572
Ccel_1208
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
       0.498
Ccel_2455
PFAM: glycoside hydrolase family 31; KEGG: csc:Csac_1354 alpha-xylosidase YicI; Belongs to the glycosyl hydrolase 31 family.
  
     0.469
Ccel_1812
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sgr:SGR_2286 hypothetical protein.
  
     0.429
Ccel_1209
PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase.
       0.420
cel9Q
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; cellulosome protein dockerin type I; KEGG: cth:Cthe_0043 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
   
0.409
Ccel_3438
PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.401
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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