Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1213PFAM: condensation domain protein; Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein. (482 aa)    
Predicted Functional Partners:
Ccel_0974
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; cobalamin B12-binding domain protein; phosphopantetheine-binding; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bwe:BcerKBAB4_1784 amino acid adenylation domain-containing protein.
 
   0.727
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
 
 0.712
Ccel_1655
PFAM: cellulosome protein dockerin type I; KEGG: sus:Acid_0258 hypothetical protein.
  
    0.704
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
  
 
 0.695
Ccel_3180
Putative transcriptional regulator, TetR family; KEGG: ctc:CTC01854 transcriptional regulator.
  
     0.631
Ccel_1302
Putative transcriptional regulator, TetR family; KEGG: ckl:CKL_2387 transcriptional regulator.
  
     0.620
Ccel_2389
KEGG: bwe:BcerKBAB4_1783 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: beta-lactamase; ABC transporter related; SMART: AAA ATPase.
 
  
 0.613
Ccel_0142
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; histidine kinase HAMP region domain protein; KEGG: cpy:Cphy_1915 AraC family transcriptional regulator.
  
     0.597
Ccel_3326
KEGG: cac:CAC2342 hypothetical protein.
  
     0.594
Ccel_3150
KEGG: efa:EF2316 hypothetical protein.
  
    0.565
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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