Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1229Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_1271 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family. (535 aa)    
Predicted Functional Partners:
Ccel_1231
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_2196 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family.
 
  
0.944
Ccel_1257
PFAM: glycoside hydrolase family 43; KEGG: fjo:Fjoh_3875 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.933
Ccel_1255
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bcl:ABC3371 alpha-L-arabinofuranosidase.
 
 
 0.928
Ccel_1235
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_2196 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family.
 
  
0.925
Ccel_1036
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
  
 
 0.915
Ccel_1221
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
  
 
 0.915
Ccel_1549
KEGG: pmo:Pmob_0233 putative outer membrane protein.
     
 0.900
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cdf:CD3064 xylose isomerase; Belongs to the xylose isomerase family.
  
 
 0.825
Ccel_1033
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.812
uxaC
PFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase.
    
 0.808
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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