Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1233Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: bfs:BF0575 putative glycosyl hydrolase/xylanase. (746 aa)    
Predicted Functional Partners:
Ccel_3438
PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
0.930
Ccel_1259
PFAM: glycoside hydrolase family 39; KEGG: csc:Csac_2409 xylan 1,4-beta-xylosidase.
 
  
 0.926
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cdf:CD3064 xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.859
Ccel_1033
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.812
uxaC
PFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase.
    
 0.808
uxaC-2
PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase.
    
 0.808
Ccel_1670
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cpe:CPE0147 beta-D-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
    
  0.802
Ccel_1009
PFAM: aldo/keto reductase; KEGG: sus:Acid_2860 aldehyde reductase.
     
  0.800
Ccel_1246
PFAM: Pectinesterase; cellulosome protein dockerin type I; KEGG: cth:Cthe_2949 pectinesterase.
 
   
 0.770
Ccel_2614
PFAM: glycoside hydrolase family 43; KEGG: cbe:Cbei_4973 alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.750
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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