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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1237Carbohydrate binding family 6; PFAM: glycoside hydrolase clan GH-D; cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cak:Caul_2129 alpha-galactosidase. (604 aa)    
Predicted Functional Partners:
Ccel_1239
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; SMART: cellulose binding type IV; KEGG: cth:Cthe_2197 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 2 family.
 
 
0.958
Ccel_1013
PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: pin:Ping_2019 beta-D-galactosidase.
 
 
 0.939
Ccel_0154
PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cpr:CPR_0750 beta-galactosidase.
 
 
 0.925
Ccel_1431
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
  0.922
Ccel_2451
PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: pmo:Pmob_0829 beta-galactosidase.
    
 0.910
Ccel_1597
PFAM: glycoside hydrolase clan GH-D; cellulosome protein dockerin type I; KEGG: aba:Acid345_1677 alpha-galactosidase.
  
  
 
0.904
Ccel_1002
PFAM: glycoside hydrolase family 4; KEGG: bcl:ABC0412 alpha-galactosidase.
    
  0.903
Ccel_3426
PFAM: glycoside hydrolase family 4; KEGG: cbe:Cbei_4359 glycoside hydrolase, family 4.
    
  0.903
Ccel_0486
PFAM: Monogalactosyldiacylglycerol synthase; KEGG: cth:Cthe_3177 monogalactosyldiacylglycerol synthase.
     
  0.900
gal59A
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cth:Cthe_2197 carbohydrate-binding family 6 protein.
 
    
0.699
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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