Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1245TIGRFAM: pectate lyase; PFAM: cellulosome protein dockerin type I; Pectic acid lyase; KEGG: sus:Acid_1098 pectate lyase. (552 aa)    
Predicted Functional Partners:
Ccel_1246
PFAM: Pectinesterase; cellulosome protein dockerin type I; KEGG: cth:Cthe_2949 pectinesterase.
 
   
0.755
Ccel_1230
Carbohydrate binding family 6; PFAM: glycoside hydrolase family 10; cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cac:CA_P0116 xylanase.
 
 
 
 0.727
Ccel_1242
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cth:Cthe_3012 carbohydrate-binding family 6 protein.
 
     0.611
Ccel_1262
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: csc:Csac_0206 protein of unknown function DUF303, acetylesterase putative; Belongs to the glycosyl hydrolase 2 family.
  
     0.608
Ccel_1241
Carbohydrate binding family 6; PFAM: coagulation factor 5/8 type domain protein; cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: fjo:Fjoh_4083 hypothetical protein.
 
     0.597
Ccel_1244
Hypothetical protein; KEGG: mhu:Mhun_0855 cytochrome c biogenesis protein, transmembrane region.
       0.576
Ccel_1229
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_1271 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.562
Ccel_1243
Hypothetical protein.
       0.554
Ccel_2403
PA14 domain protein; PFAM: Fibronectin type III domain protein; PA14 domain protein; KEGG: cth:Cthe_0316 PA14.
  
     0.523
Ccel_1236
Protein of unknown function DUF1680; PFAM: cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; protein of unknown function DUF1680; SMART: beta and gamma crystallin; KEGG: sus:Acid_1242 hypothetical protein.
 
     0.520
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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